Introduction and setup
Overview
Teaching: XX min
Exercises: XX minQuestions
Install required packages.
Download the data.
Download data
The data we will use in this lesson is obtained from the Gene Expression Omnibus, accession number GSE96870.
dir.create("data", showWarnings = FALSE)
download.file(
url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_counts_cerebellum.csv?raw=true",
destfile = "data/GSE96870_counts_cerebellum.csv"
)
download.file(
url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_coldata_cerebellum.csv?raw=true",
destfile = "data/GSE96870_coldata_cerebellum.csv"
)
download.file(
url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_coldata_all.csv?raw=true",
destfile = "data/GSE96870_coldata_all.csv"
)
download.file(
url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_rowranges.tsv?raw=true",
destfile = "data/GSE96870_rowranges.tsv"
)
Key Points
Key point 1